Scraping web data in unstructured format

A common scenario for web scraping is when the data we want is available in plain html, but in different parts of the web, and not in a table format. In this scenario, we will need to find a way to extract each element, and then put it together into a data frame manually.

The motivating example here will be the website ipaidabribe.com, which contains a database of self-reports of bribes in India. We want to learn how much people were asked to pay for different services, and by which departments.

url <- 'http://ipaidabribe.com/reports/paid'

We will also be using rvest, but in a slightly different way: prior to scraping, we need to identify the CSS selector of each element we want to extract.

A very useful tool for this purpose is selectorGadget, an extension to the Google Chrome browser. Go to the following website to install it: http://selectorgadget.com/. Now, go back to the ipaidabribe website and open the extension. Then, click on the element you want to extract, and then on the rest of highlighted elements that you do not want to extract. After only the elements you’re interested in are highlighted, copy and paste the CSS selector into R.

Now we’re ready to scrape the website:

library(rvest, warn.conflicts=FALSE)
## Loading required package: xml2
bribes <- read_html(url) # reading the HTML code
amounts <- html_nodes(bribes, ".paid-amount span") # identify the CSS selector
amounts # content of CSS selector
## {xml_nodeset (10)}
##  [1] <span>Paid INR 1,500\r\n                        </span>
##  [2] <span>Paid INR 300\r\n                        </span>
##  [3] <span>Paid INR 500\r\n                        </span>
##  [4] <span>Paid INR 500\r\n                        </span>
##  [5] <span>Paid INR 1,500\r\n                        </span>
##  [6] <span>Paid INR 4,000\r\n                        </span>
##  [7] <span>Paid INR 530\r\n                        </span>
##  [8] <span>Paid INR 150\r\n                        </span>
##  [9] <span>Paid INR 100\r\n                        </span>
## [10] <span>Paid INR 1,000\r\n                        </span>
html_text(amounts)
##  [1] "Paid INR 1,500\r\n                        "
##  [2] "Paid INR 300\r\n                        "  
##  [3] "Paid INR 500\r\n                        "  
##  [4] "Paid INR 500\r\n                        "  
##  [5] "Paid INR 1,500\r\n                        "
##  [6] "Paid INR 4,000\r\n                        "
##  [7] "Paid INR 530\r\n                        "  
##  [8] "Paid INR 150\r\n                        "  
##  [9] "Paid INR 100\r\n                        "  
## [10] "Paid INR 1,000\r\n                        "

We still need to do some cleaning before the data is usable:

amounts <- html_text(amounts)
(amounts <- gsub("Paid INR | |\r|\n|,", "", amounts)) # remove text, white space, and commas
##  [1] "1500" "300"  "500"  "500"  "1500" "4000" "530"  "150"  "100"  "1000"
(amounts <- as.numeric(amounts)) # convert to numeric
##  [1] 1500  300  500  500 1500 4000  530  150  100 1000

Let’s do another one: transactions during which the bribe ocurred

transaction <- html_nodes(bribes, ".transaction a")
(transaction <- html_text(transaction))
##  [1] "Family Certificate"               "Police Verification for Passport"
##  [3] "Traffic Violations"               "Permission to sell Wood"         
##  [5] "Police Verification for Passport" "Building Completion Certificate" 
##  [7] "Registration of Mortgage Deed"    "Medical Certificate"             
##  [9] "Speed Post"                       "False Allegations"

And one more: the department that is responsible for these transactions

# and one more
dept <- html_nodes(bribes, ".name a")
(dept <- html_text(dept))
##  [1] "Health and Family Welfare" "Police"                   
##  [3] "Transport"                 "Forest"                   
##  [5] "Police"                    "Municipal Services"       
##  [7] "Stamps and Registration"   "Health and Family Welfare"
##  [9] "Post Office"               "Police"

This was just for one page, but note that there are many pages. How do we scrape the rest? First, following the best practices on coding, we will write a function that takes the URL of each page, scrapes it, and returns the information we want.

scrape_bribe <- function(url){
    bribes <- read_html(url)
    # variables that we're interested in
    amounts <- html_text(html_nodes(bribes, ".paid-amount span"))
    amounts <- as.numeric(gsub("Paid INR | |\r|\n|,", "", amounts))
    transaction <- html_text(html_nodes(bribes, ".transaction a"))
    dept <- html_text(html_nodes(bribes, ".name a"))
    # putting together into a data frame
    df <- data.frame(
        amounts = amounts,
        transaction = transaction,
        dept = dept,
            stringsAsFactors=F)
    return(df)
}

And we will start a list of data frames, and put the data frame for the initial page in the first position of that list.

bribes <- list()
bribes[[1]] <- scrape_bribe(url)
str(bribes)
## List of 1
##  $ :'data.frame':    10 obs. of  3 variables:
##   ..$ amounts    : num [1:10] 1500 300 500 500 1500 4000 530 150 100 1000
##   ..$ transaction: chr [1:10] "Family Certificate" "Police Verification for Passport" "Traffic Violations" "Permission to sell Wood" ...
##   ..$ dept       : chr [1:10] "Health and Family Welfare" "Police" "Transport" "Forest" ...

How should we go about the following pages? Note that the following urls had page=XX, where XX is 10, 20, 30… So we will create a base url and then add these additional numbers. (Note that for this exercise we will only scrape the first 5 pages.)

base_url <- "http://ipaidabribe.com/reports/paid?page="
pages <- seq(0, 40, by=10)

And now we just need to loop over pages, and use the function we created earlier to scrape the information, and add it to the list. Note that we’re adding a couple of seconds between HTTP requests to avoid overloading the page, as well as a message that will informs us of the progress of the loop.

for (i in 2:length(pages)){
    # informative message about progress of loop
    message(i, '/', length(pages))
    # prepare URL
    url <- paste(base_url, pages[i], sep="")
    # scrape website
    bribes[[i]] <- scrape_bribe(url)
    # wait a couple of seconds between URL calls
    Sys.sleep(2)
}
## 2/5
## 3/5
## 4/5
## 5/5

The final step is to convert the list of data frames into a single data frame that we can work with, using the function do.call(rbind, LIST) (where LIST is a list of data frames).

bribes <- do.call(rbind, bribes)
head(bribes)
##   amounts                      transaction                      dept
## 1    1500               Family Certificate Health and Family Welfare
## 2     300 Police Verification for Passport                    Police
## 3     500               Traffic Violations                 Transport
## 4     500          Permission to sell Wood                    Forest
## 5    1500 Police Verification for Passport                    Police
## 6    4000  Building Completion Certificate        Municipal Services
str(bribes)
## 'data.frame':    50 obs. of  3 variables:
##  $ amounts    : num  1500 300 500 500 1500 4000 530 150 100 1000 ...
##  $ transaction: chr  "Family Certificate" "Police Verification for Passport" "Traffic Violations" "Permission to sell Wood" ...
##  $ dept       : chr  "Health and Family Welfare" "Police" "Transport" "Forest" ...

Let’s get some quick descriptive statistics to check everything worked. First, what is the most common transaction during which a bribe was paid?

tab <- table(bribes$transaction) # frequency table
tab <- sort(tab, decreasing=TRUE)   # sorting the table from most to least common
head(tab)
## 
## Police Verification for Passport               Traffic Violations 
##                                6                                4 
##               Activities on Beat      Customs Check and Clearance 
##                                3                                3 
##                False Allegations                       Filing FIR 
##                                2                                2

What was the average bribe payment?

summary(bribes$amount)
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##      50     500    1500   28758    9000  901000

And what was the average payment for each department?

agg <- aggregate(bribes$amount, by=list(dept=bribes$dept), FUN=mean)
agg[order(agg$x, decreasing = TRUE),] # ordering from highest to lowest
##                               dept          x
## 1  Customs, Excise and Service Tax 307000.000
## 7                           Others 100000.000
## 2                        Education  43500.000
## 15                       Transport  25320.000
## 14         Stamps and Registration  19004.286
## 12                        Railways   5350.000
## 6               Municipal Services   4000.000
## 8                         Passport   3066.667
## 10                     Post Office   2550.000
## 13                         Revenue   2500.000
## 9                           Police   1991.667
## 5        Health and Family Welfare    825.000
## 4                           Forest    500.000
## 11                 Public Services    500.000
## 3     Electricity and Power Supply    250.000